29 Aug
2012
29 Aug
'12
1:01 p.m.
Hi
I am having a problem getting recon-all to finish on 1 subject.
The first time I ran recon-all -all I got an mri_watershed error. (see attached log).
Based on one of the posts to the list I then ran: recon-all -skullstrip -no-wsgcaatlas -s <subj id>
This completed successfully. Then I ran: recon-all -autorecon2 -autorecon3 -s <subj id>
This did not complete successfully with the error that it can't find the brain.mgz file. I did look at the orig.mgz and T1.mgz files and they look fine. The talairach transform I think is also fine.
What do I do about this?
Thanks, Darren