17 Oct
2017
17 Oct
'17
7:10 p.m.
Dear freesurfer experts,
I am trying to create a V1 mask in volume, based on the V1 label, in fsaverage space.
I use the following command: mri_label2vol --label /Applications/freesurfer/subjects/fsaverage/label/rh.V1.label --temp /Applications/freesurfer/subjects/fsaverage/mri/orig.mgz --hemi rh --identity --o v1volume.nii
When I check out the output (in freeview, I load orig,mgz and v1volume.nii as a mask), V1 as defined in v1volume.nii seems to be mislocated. I am surprised since I would think that I use the proper inputs ; or is my command line somehow wrong?
Thank you very much, Florence