Can you send me /opt/freesurfer/subjects/AA262.G1/stats/aseg.stats? Also, please remember to copy the list so that others can see the answer and so that others can help with the answer. thanks! doug
On 05/16/2012 11:56 AM, Rashmi Singh wrote:
Dough,
Yes, the stat files exist with all its content. I can individually import the text aseg files into xcell sheet, but I have 44 data files, so I was trying asegstat2table option. What do you think may be going wrong. The output file says that recon all completed without error for all my subject files.
Thanks, Rashmi.
Do those files exist? Do they have content in them? doug
On 05/15/2012 05:51 PM, Rashmi Singh wrote:
Hello, I am trying to get the asegmentation information after the recon-all run in the table form, but I am continuously getting the following error asegstats2table --subjects AA262.G1 AA267.G2 AA304.G1 --meas volume --tablefile asegstats.txt SUBJECTS_DIR : /opt/freesurfer/subjects Parsing the .stats files ERROR: The stats file /opt/freesurfer/subjects/AA262.G1/stats/aseg.stats is not found or is too small to be a valid statsfile Use --skip flag to automatically skip bad stats files I did try to use the skip option , but then , it skips all the files giving the same error. When I individually open the aseg files from the stats folder, those look fine to me. Please advise. Rashmi.
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