Within a given session you must have all conditions represented. They all do not need to be in the same run, but they must all appear at least once across all runs. It looks like only 33 of the 69 are there. BTW, 69 is probably not a realistic number of conditions, way too big.
doug
Gabriel A. Tobon wrote:
Sorry about that, I attached the wrong error msg from while I was trying "selxavg3-sess". They are numbered 1-69.
Wed Jul 14 18:24:59 EDT 2010 INFO (kan_ecev_207ab): RunList = 008 009 010 011 012 013 014 015 016 017 018 019 020 021 ERROR: there are 33 non-null conditions in the paradigm file. However, 69 non-null conditions were specified when mkanalysis was run. These must be made consistent in order to run selxavg-sess.
What is the difference between "selxavg-sess" and "selxavg3-sess"? The error from "selxavg3-sess" says:
??? Error using ==> svd Input to SVD must not contain NaN or Inf.
Error in ==> cond at 40 s = svd(A);
Error in ==> fast_selxavg3 at 248 XCond = cond(XtX);
ERROR: fast_selxavg3() failed\n
Thank you,
Gabe
On Wed, Jul 14, 2010 at 6:21 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
69 conditions? Are they numbered 1-69? That output does not have the right error msg in it. Gabriel A. Tobon wrote: Hello, I have event related data with 69 different conditions, and every condition does not appear in every run. This causes selxavg-sess to throw an error. Part of the relevant debug output is below. Why does every condition need to appear in every run? Thank you, Gabe echo "$sess " | & tee -a $LF echo /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab tee -a /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab date | & tee -a $LF date tee -a /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log Wed Jul 14 18:10:48 EDT 2010 if ( ! -d $sess ) then if ( ! -d /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab ) then set funcdir = $sess/$fsd set funcdir = /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold set anadir = $sess/$fsd/$analysisname set anadir = /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze if ( $#OutParent == 0 ) then if ( 0 == 0 ) then set anadir = $sess/$fsd/$analysisname set anadir = /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze else else echo anadir = $anadir | tee -a $LF echo anadir = /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze tee -a /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log anadir = /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze if ( -e $anadir && $DoGLMFit ) then if ( -e /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/data/kan_ecev_207ab/bold/mc_analyze && 1 ) then echo "analysis $analysis alread exists for $sessbase" | tee -a $LF echo analysis mc_analyze alread exists for kan_ecev_207ab tee -a /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log analysis mc_analyze alread exists for kan_ecev_207ab if ( $Skip == 0 && $Overwrite == 0 && ! $monly && ! $perrun && ! $jkrun ) then if ( 0 == 0 && 0 == 0 && ! 0 && ! 0 && ! 0 ) then echo "ERROR: analysis $analysis already exists. You must " | tee -a $LF echo ERROR: analysis mc_analyze already exists. You must tee -a /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log ERROR: analysis mc_analyze already exists. You must echo " specify whether to -skip or -overwrite" | tee -a $LF echo specify whether to -skip or -overwrite tee -a /mindhive/nklab/projects/eightcat-cluster/gtobon_analysis/8cat-ev2-final/analysis/log/selxavg3-sess-bold-mc_analyze-100714181048.log specify whether to -skip or -overwrite exit 1 ; exit 1 ------------------------------------------------------------------------ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>