Hi there,
I have searched the archive and couldn't find information relating to this issue.
I am running longitudinal analysis in FreeSurfer v7.3.2 in and using the segmentHA_T1_long.sh. The subfields segmentation works as expected, however the stats files are outputted to the “mri" folder instead of to the “stats" folder. Consequently, the attempts at concatenating these files using “asegstats2table” or “ConcatenateSubregionsResults.sh” won’t work. I was able to get around the issue of concatenation using a customized script.
My question is whether there are any concerns with the outputs for this version that I should be aware of? Or should I trust that the stats outputs are correct, despite being in the “mri” instead of “stats” folder? I also noticed that the Wiki shows examples with files tagged as “v21”, while the version I am using outputs “v22” text files.
Please find attached is a sample log file for a participant with details about OS etc.
These are the files listed in the “mri" folder:
Text files:
lh.amygNucVolumes-T1.long.v22.txt lh.hippoSfVolumes-T1.long.v22.txt rh.amygNucVolumes-T1.long.v22.txt rh.hippoSfVolumes-T1.long.v22.txt
Volumes:
lh.hippoAmygLabels-T1.long.v22.CA.FSvoxelSpace.mgz lh.hippoAmygLabels-T1.long.v22.CA.mgz lh.hippoAmygLabels-T1.long.v22.FS60.FSvoxelSpace.mgz lh.hippoAmygLabels-T1.long.v22.FS60.mgz lh.hippoAmygLabels-T1.long.v22.FSvoxelSpace.mgz lh.hippoAmygLabels-T1.long.v22.HBT.FSvoxelSpace.mgz lh.hippoAmygLabels-T1.long.v22.HBT.mgz lh.hippoAmygLabels-T1.long.v22.mgz
rh.hippoAmygLabels-T1.long.v22.CA.FSvoxelSpace.mgz rh.hippoAmygLabels-T1.long.v22.CA.mgz rh.hippoAmygLabels-T1.long.v22.FS60.FSvoxelSpace.mgz rh.hippoAmygLabels-T1.long.v22.FS60.mgz rh.hippoAmygLabels-T1.long.v22.FSvoxelSpace.mgz rh.hippoAmygLabels-T1.long.v22.HBT.FSvoxelSpace.mgz rh.hippoAmygLabels-T1.long.v22.HBT.mgz rh.hippoAmygLabels-T1.long.v22.mgz

Thanks for your help!
Nárlon
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