[Freesurfer] Re: Pineal Gland on v8

I'm not sure it has been integrated into recon-all. You can try mri_pglands_seg directly.

Yujing

From: Thakore, Radha radhathakore@creighton.edu Sent: Monday, February 23, 2026 3:42 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Pineal Gland on v8

External Email - Use Caution Hello,

I had a quick question about pineal gland segmentation. I heard that it would be possible to run pineal gland segmentation using FreeSurfer v.8. However, I am unsure about the Terminal input code with recon-all to specifically do that. Would you be able to help me with quantification of the pineal gland?

Thank you!

Sincerely,

Radha Thakore

M.D. Student | Class of 2028

Creighton University School of Medicine | Phoenix Campus