External Email - Use Caution
Hello Elizabeth, I don’t see anything wrong with how the 6.0..4/bin/bet2 binary is built.
It would be interesting to see if the output is different with an older fsl version like 5.0.7. In a new/different terminal window you could setup your environment with 5.0.7 and then try again,
$ setenv FSLDIR /usr/pubsw/packages/fsl/5.0.7$ setenv FSL_DIR "$FSLDIR" .. . . then source freesurfer setup or run . . . $ source $FSLDIR/etc/fslconf/fsl.csh - R. On Dec 27, 2021, at 15:34, Kaplan, Elizabeth <elizabeth_kaplan@brown.edu> wrote: External Email - Use Caution Hello All, I am running into an error when attempting to run the 'trac-all -prep -c" command. The error reads "/autofs/cluster/pubsw/2/pubsw/Linux2-2.3-x86_64/packages/fsl.64bit/6.0.4/bin/bet: line 399: 6625 Illegal instruction"I set my FSLDIR following the instructions on the FSL User guide and added these lines to my .bash_profile file. Any suggestions on how to navigate this issue? Thank you in advance!<trac-all.log><configuration.file.tutorial>_______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer%E2%80%8B