Hi,
I am trying to install the freesurfer-Linux-suse-ia64-stable-pub-v4.5.0.tar to my user home directory (/home/knutsen) on the following Caltech cluster:
Neuroecon Cluster 12 Dell Poweredge 1950 nodes 16 GB RAM per node Gigabit ethernet interconnect Matlab Distributed compute engine Rocks 5.1 Provisioning Maui/Torque scheduling and resource management 60 TB Lustre File System DDN 9700
The files seem to have unpacked correctly.
ls -a /home/knutsen/freesurfer . build-stamp.txt FreeSurferEnv.sh mni subjects .. DefectLUT.txt fsafd SegmentNoLUT.txt tkmeditParcColorsCMA ASegStatsLUT.txt diffusion fsfast sessions AUTHORS docs lib SetUpFreeSurfer.csh average FreeSurferColorLUT.txt .license SetUpFreeSurfer.sh bin FreeSurferEnv.csh matlab Simple_surface_labels2009.txt
I ran the SetUpFreesurfer.sh and it properly recognizes $FREESURFER_HOME
I then tried to import some Siemens dicom files to the subjects dir using the following command from /home/knutsen: recon-all -s ATM -i Subjects/100/Anatomy/2/1.3.12.2.1107.5.2.13.20524.30000010011116574178100000018.dcm -i Subjects/100/Anatomy/3/1.3.12.2.1107.5.2.13.20524.30000010011116574178100000196.dcm -i Subjects/100/Anatomy/4/1.3.12.2.1107.5.2.13.20524.30000010011116574178100000374.dcm -i Subjects/100/Anatomy/5/1.3.12.2.1107.5.2.13.20524.30000010011116574178100000552.dcm
And get the following errors: Subject Stamp: freesurfer-ia64-suse-linux-stable4-20090905 Current Stamp: freesurfer-ia64-suse-linux-stable4-20090905 INFO: SUBJECTS_DIR is /home/knutsen/freesurfer/subjects Actual FREESURFER_HOME /home/knutsen/freesurfer Linux neuroecon.caltech.edu 2.6.18-128.1.14.el5 #1 SMP Mon Jun 1 15:52:58 EDT 2009 x86_64 x86_64 x86_64 GNU/Linux /home/knutsen/freesurfer/bin/mri_convert: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/flirt: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mri_convert: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/tkregister2_cmdl: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mri_normalize: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mri_watershed: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mri_segment: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mri_label2label: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mri_em_register: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mri_ca_normalize: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mri_ca_register: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mri_ca_label: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mri_pretess: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mri_fill: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mri_tessellate: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mri_concatenate_lta: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mri_normalize_tp2: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mris_smooth: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mris_inflate: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mris_curvature: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mris_sphere: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mris_fix_topology: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mris_topo_fixer: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mris_ca_label: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mris_euler_number: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mris_make_surfaces: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mris_register: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mris_anatomical_stats: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mrisp_paint: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mris_curvature_stats: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mri_robust_register: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mri_robust_template: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mri_and: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mri_or: Exec format error. Binary file not executable. /home/knutsen/freesurfer/bin/mri_fuse_segmentations: Exec format error. Binary file not executable. /home/knutsen/freesurfer/subjects/ATM
mri_convert /home/knutsen/Subjects/100/Anatomy/2/1.3.12.2.1107.5.2.13.20524.30000010011116574178100000018.dcm /home/knutsen/freesurfer/subjects/ATM/mri/orig/001.mgz
/home/knutsen/freesurfer/bin/mri_convert: Exec format error. Binary file not executable. Linux neuroecon.caltech.edu 2.6.18-128.1.14.el5 #1 SMP Mon Jun 1 15:52:58 EDT 2009 x86_64 x86_64 x86_64 GNU/Linux
recon-all exited with ERRORS at Tue Feb 9 17:24:49 PST 2010
Wondering what I did wrong in the install that all the binaries are not executable. It's probably something obvious.
Thanks for any help/advice, Tamara