7 Aug
2013
7 Aug
'13
10:19 a.m.
Hi folks,
When issuing a recon-all command, I'm seeing the following message:
set: Variable name must contain alphanumeric characters
recon-all stalls and doesn't move forward (doesn't even create the subject directory).
I'm using Freesurfer 5.3.0 (freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0) on Ubuntu 12.04.2. In fact, we just upgraded to this version of Ubuntu from an older version of Mandriva and to this latest version of Freesurfer. recon-all did not produce this message before these two upgrades. Any help you can offer would be most appreciated! Thanks in advance.
Best,
Heather
--
Heather L. Urry, Ph.D.
Department of Psychology
Tufts University
490 Boston Avenue
Medford, MA 02155
email: heather.urry@tufts.edu
phone: 617-627-3733
fax: 617-627-3181
http://ase.tufts.edu/psychology/ebbl