Hello Dear Freesurfer Developers,
I am attempting to run Tracula in the last to subject of my study (I had processed all the other subjects using the same script without problems). However, when I try to run the scrip bellow, I am having the error:
" ERROR: Must specify input table of gradient vectors "
I am reviewed the associated DICOM images and couldn't find any problem with the images. I reviewed a couple emails in the list, but couldn't find a clear reason for keeping having this error.
I am using the Freesurfer Dev version.
I really appreciate any help.
Thank you, Gabriela
# FreeSurfer SUBJECTS_DIR # T1 images and FreeSurfer segmentations are expected to be found here # setenv SUBJECTS_DIR /autofs/cluster/guptagp/LLLT/fsrecon
# Output directory where trac-all results will be saved # Default: Same as SUBJECTS_DIR # set dtroot = /autofs/cluster/guptagp/gabi/tracula/Output
# Subject IDs (one per time point per subject) # set subjlist = ( 3LT050_s1_170715 )
# Longitudinal base template subject IDs (one for each time point above) # set baselist = ( 3LT050 )
# In case you want to analyze only Huey and Louie # Default: Run analysis on all time points and subjects # # set runlist = (1 2 5 6)
# Input diffusion DICOMs (file names relative to dcmroot) # If original DICOMs don't exist, these can be in other image format # but then bvecfile and bvalfile must be specified (see below) # set dcmroot = /autofs/cluster/guptagp/LLLT/raw_data set dcmlist = ( 3LT050_s1_170715/MR.1.3.12.2.1107.5.2.43.67026.20170715092715598296003 )
Gabriela Longo, MD, MSc.
Emergency Radiology Clinical Fellow, Emergency Radiology Division
Massachusetts General Hospital (MGH)
mfigueirolongo@mgh.harvard.edu
Phone: +1 857 214 0568