[Freesurfer] how to use time points

Hi, there,

I have scans from two time points, and they have been cross-sectionally processed. But both of they missed some white matter in some slices, so I manually add control points to them, and re-run it. Both of them look fine now.

Then, I send them to longitudinal stream. After the -base step is finished. I load the output in the based folder, those white matter are misclassified at the same place again.

Is a method which can use the control points I added to the two time point when I called recon-all -base to build the base template.

Or I need add control points to the built base subject again?

Thanks! Guang _________________________________________________________________ Hotmail: Powerful Free email with security by Microsoft. http://clk.atdmt.com/GBL/go/201469230/direct/01/