External Email - Use Caution
Hello Joseph, You can also try doing the cmake build via makefile.wiki found under the section, "Complete Cmake Build with makefile wrapper” on the page ttps://surfer.nmr.mgh.harvard.edu/fswiki/CMake That will try and use curl to download 3rd party packages as part of doing the build. - R.
On Dec 22, 2018, at 05:26, ts+ml@rcmd.org wrote: External Email - Use Caution Please see this recent email from the list archives, I think it is what you are looking for:TimHello Joseph,Try this link for the 3rd party libs (to use with the cmake build)http://surfer.nmr.mgh.harvard.edu/pub/data/fspackages/prebuilt/- robOn Sep 20, 2018, at 8:39 PM, Moon,> wrote: External Email - Use CautionHi,I’m trying to build Freesurfer according to the instructions athttp://surfer.nmr.mgh.harvard.edu/fswiki/freesurfer_linux_developers_pageHow..., the FTP link to prebuilt 3rd party libraries seems to be down. The directory “ftp://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/prebuilt” is no longer being hosted.Please let me know if I misunderstood something!On December 21, 2018 at 5:23 PM "King, Maximilian" <maximilian_king@brown.edu> wrote: External Email - Use Caution Hi Freesurfer folks!I am attempting to build freesurfer from source for our HPC center here atBrown University, but are running into a snag. Looks like the documentationpoints to a dead link for Step 3 of the freesurfer_linux_developers_page<https://surfer.nmr.mgh.harvard.edu/fswiki/freesurfer_linux_developers_page%3... are required to get the prebuilt bundle of 3rd party dependancies using:wget ftp://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/prebuilt/centos6_x86_64/centos6-x86_64-packages.tar.gzHowever, the command fails as the directory does not exist.$ wgetftp://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/prebuilt/centos6_x86_64/centos6-x86_64-packages.tar.gz--2018-12-21 11:07:49--ftp://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/prebuilt/centos6_x86_64/centos6-x86_64-packages.tar.gz => ‘centos6-x86_64-packages..tar.gz’Resolving surfer.nmr.mgh.harvard.edu (surfer.nmr.mgh.harvard.edu)...132.183.240.105Connecting to surfer.nmr.mgh.harvard.edu(surfer.nmr.mgh.harvard.edu)|132.183.240.105|:21...connected.Logging in as anonymous ... Logged in!==> SYST ... done. ==> PWD ... done.==> TYPE I ... done. ==> CWD (1)/pub/dist/fs_supportlibs/prebuilt/centos6_x86_64 ...No such directory ‘pub/dist/fs_supportlibs/prebuilt/centos6_x86_64’.Any chance I could get the updated path for these dependencies? Happyholidays!Cheers,Max-- *Maximilian King, MSc*HPC Application ScientistCenter for Computation and VisualizationBrown University Computing and Information Systems180 George St, Providence, RI 02906, USATel: +1 (401) 863-7448*maximilian_king@brown.edu* <maximilian_king@brown.edu>*http://ccv.brown.edu*%C2%A0%3Chttp://ccv.brown.edu/%3E______________________... mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer--Dr. Tim SchäferPostdoc Computational NeuroimagingDepartment of Child and Adolescent Psychiatry, Psychosomatics and PsychotherapyUniversity Hospital Frankfurt, Goethe University Frankfurt am Main, Germany_______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh..harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer