Hi Mason,
My guess is that freesurfer is still grabbing the initial license. Have you been sure to remove the original one? It might be hiding as a .license file
Best Andrew
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Mason Wells WellsMT1@cardiff.ac.uk Reply-To: FS Help freesurfer@nmr.mgh.harvard.edu Date: Wednesday, June 17, 2020 at 5:34 AM To: "freesurfer-bounces@nmr.mgh.harvard.edu" freesurfer-bounces@nmr.mgh.harvard.edu, FS Help freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Freesurfer license file error
External Email - Use Caution Hi Expets,
I am trying to work with the Ciftify package, a great tool for converting non-HCP data into cifti format. I am running the following docker command. However, I get an error with the return code 255
sudo docker run --entrypoint ciftify_recon_all -ti --rm -v /home/masontwells/Documents/Data/freesurfer/subjects:/data:ro -v /home/masontwells/Documents/Ciftify/HCP/outputs:/out tigrlab/fmriprep_ciftify:1.1.8-2.1.1 --surf-reg FS --fs-subjects-dir /data --ciftify-work-dir /out PPT_1x
cmd: mri_convert /data/PPT_1x/mri/T1.mgz /out/PPT_1x/T1w/T1w.nii.gz Failed with returncode 255
At the bottom of the ciftify recon-all log it says the below. However, I downloaded the license as advised, placed it in the correct directory (usr/local/freesurfer). I have also added the path to the license to my bashrc. Have you seen this type of error before?
GNU libc version: 2.23 ERROR: Systems running GNU glibc version greater than 2.15 require a newly formatted license file (it's free). Please download a new one from the following page: http://surfer.nmr.mgh.harvard.edu/registration.html --------------------------------------------------------------------------
Cheers, Mason
Mason T Wells, MSc PhD student School of Optometry and Vision Sciences & Cardiff University Brain Research Imaging Centre (CUBRIC), School of Psychology Cardiff University Cardiff CF24 4HQ UK
Email: WellsMT1@cardiff.ac.ukmailto:WellsMT1@cardiff.ac.uk Tel: 02920 879628 Web: Cardiff University webpagehttps://www.cardiff.ac.uk/people/research-students/view/974214- Mason T Wells, MSc Myfyriwr PhD Yr Ysgol Optometreg a Gwyddorau’r Golwg & Canolfan Ymchwil Delweddu’r Ymennydd Prifysgol Caerdydd (CUBRIC), Yr Ysgol Seicoleg Prifysgol Caerdydd Heol Maindy Caerdydd CF24 4HQ DU
E-bost: WellsMT1@caerdydd.ac.ukmailto:WellsMT1@caerdydd.ac.uk Ffôn: 02920 879628