Probably you'll want to use mri_vol2vol so that you can incorporate your registration between the fMRI and the anatomical
On 04/10/2017 10:28 AM, Bruce Fischl wrote:
Hi Maria
are they in register? If so you can do:
mri_convert -rl fmri_data.mgh ribbon.mgz mask.mgz mri_mask fmri_data.mgh mask.mgz masked_fmri.mgz
cheers Bruce
On Mon, 10 Apr 2017, Maria Hakonen wrote:
Dear Freesurfer experts, I have tried to mask fMRI data with grey matter mask as follows: mri_mask fmri_data.mgh ribbon.mgz masked_fmri.mgz
However, I am getting an error " dimension mismatch between source and mask".
Could someone please let me know how to solve this problem?
Best, Maria
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