Hi,
I'm trying to run recon-all in FreeSurfer 6.0 but I keep getting error messages and some strange behavior:
ls 01001/0/2/ 100.dcm 106.dcm 111.dcm 117.dcm 122.dcm 128.dcm 133.dcm 139.dcm 144.dcm 14.dcm 155.dcm 160.dcm 166.dcm 171.dcm 17.dcm 22.dcm 28.dcm 33.dcm 39.dcm 44.dcm 4.dcm 55.dcm 60.dcm 66.dcm 71.dcm 77.dcm 82.dcm 88.dcm 93.dcm 99.dcm 101.dcm 107.dcm 112.dcm 118.dcm 123.dcm 129.dcm 134.dcm 13.dcm 145.dcm 150.dcm 156.dcm 161.dcm 167.dcm 172.dcm 18.dcm 23.dcm 29.dcm 34.dcm 3.dcm 45.dcm 50.dcm 56.dcm 61.dcm 67.dcm 72.dcm 78.dcm 83.dcm 89.dcm 94.dcm 9.dcm 102.dcm 108.dcm 113.dcm 119.dcm 124.dcm 12.dcm 135.dcm 140.dcm 146.dcm 151.dcm 157.dcm 162.dcm 168.dcm 173.dcm 19.dcm 24.dcm 2.dcm 35.dcm 40.dcm 46.dcm 51.dcm 57.dcm 62.dcm 68.dcm 73.dcm 79.dcm 84.dcm 8.dcm 95.dcm 103.dcm 109.dcm 114.dcm 11.dcm 125.dcm 130.dcm 136.dcm 141.dcm 147.dcm 152.dcm 158.dcm 163.dcm 169.dcm 174.dcm 1.dcm 25.dcm 30.dcm 36.dcm 41.dcm 47.dcm 52.dcm 58.dcm 63.dcm 69.dcm 74.dcm 7.dcm 85.dcm 90.dcm 96.dcm 104.dcm 10.dcm 115.dcm 120.dcm 126.dcm 131.dcm 137.dcm 142.dcm 148.dcm 153.dcm 159.dcm 164.dcm 16.dcm 175.dcm 20.dcm 26.dcm 31.dcm 37.dcm 42.dcm 48.dcm 53.dcm 59.dcm 64.dcm 6.dcm 75.dcm 80.dcm 86.dcm 91.dcm 97.dcm 105.dcm 110.dcm 116.dcm 121.dcm 127.dcm 132.dcm 138.dcm 143.dcm 149.dcm 154.dcm 15.dcm 165.dcm 170.dcm 176.dcm 21.dcm 27.dcm 32.dcm 38.dcm 43.dcm 49.dcm 54.dcm 5.dcm 65.dcm 70.dcm 76.dcm 81.dcm 87.dcm 92.dcm 98.dcm
recon-all -subject 1001_c1 -i 01001/0/2/1.dcm -all
................................ writing to /work/projects/nn9208k/tbi/morfometri_test/�1001_c1/mri/orig/001.mgz... #-------------------------------------------- #@# MotionCor fr. 14. juli 10:04:21 +0200 2017 ERROR: no run data found in /work/projects/nn9208k/tbi/morfometri_test/�1001_c1/mri. Make sure to have a volume called 001.mgz in /work/projects/nn9208k/tbi/morfometri_test/�1001_c1/mri/orig. If you have a second run of data call it 002.mgz, etc. See also: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Conversion Linux compute-16-36.local 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s �1001_c1 exited with ERRORS at fr. 14. juli 10:04:21 +0200 2017
Not sure why it crashes, and why does it add "?" to the subject name?
Thank you!
sincerely yours,
Lars M. Rimol, PhD Senior researcher, Norwegian Advisory Unit for functional MRI Department of Radiology, St. Olav's University hospital, 7006 Trondheim, Norway