Hi, I am running FreeSurfer version 3.01 and am trying to convert some .mgz files to *.nii format. When I run
mri_convert in_vol.mgz out_vol.nii
or
mri_convert -ot nii in_vol.mgz out_vol.nii
mri_convert runs without errors but the resulting .nii file cannot be opened by AFNI. Do you know how I can create an nii file that will open in AFNI?
~Michele