17 Jun
2013
17 Jun
'13
7:13 p.m.
Hello everyone,
I was trying out FS-FAST tutorial with my set of images (converted to NIFTI from AFNI BRIK format using 3dAFNItoNIFTI). However, I get this error 'nifti1Read(): unsupported slice timing pattern 5 in … '.
Looking at NIFTI.h, this value (#define NIFTI_SLICE_ALT_INC2 5) is added to cater for acquisition schemes in some siemens scanners (ours is siemens). Why doesn't Freesurfer like this?
I looked through the Freesurfer mailing list, but didn't quite find a solution yet. I am new to whole fMRI analysis, so apologies if I am missing something obvious.
Many thanks, Mariam.