Hi Dear Emma, Here's the command : "mri_watershed -LABEL 001.mgz out.mgz" and the output file is attached. Thank you in advance Fereshte
On Mon, Oct 16, 2017 at 6:45 PM Boyd, Emma EBOYD2@mgh.harvard.edu wrote:
Interesting.. would you mind sending me the command you ran and file drop the input and output volumes to me?: https://gate.nmr.mgh.harvard. edu/filedrop2/
Emma
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Fereshte < fereshte.ramezani@gmail.com> *Sent:* Sunday, October 15, 2017 6:43:08 AM *To:* Freesurfer support list *Subject:* Re: [Freesurfer] Extracting labels using mri_watershed
Hi Emma, I've tried this before but surprisingly not such labels in the output volume.
On Wed, Oct 11, 2017 at 9:03 PM Boyd, Emma EBOYD2@mgh.harvard.edu wrote:
Hi Fereshte,
mri_watershed -LABEL inputvolume.mgz outputvolume.mgz
The output volume will contain 6 labels: 0 = exterior 1 = scalp 2 = skull 3 = csf 4 = gray 5 = white 6 = fat tissue
Emma
On Oct 11, 2017, at 3:38 AM, Fereshte fereshte.ramezani@gmail.com
wrote:
Dear Experts, How is it possible to extract labels like scalp and skull using -LABEL
flag in mri_watershed ?
Thanks for your attention.
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