Dear Freesurfer developers,
I am attempting to run the localGI command to calculate the gyrification of a group of subjects. Freesurfer version 5.3.0 was used all the way through the process.
The command I have been using is as follows:
recon-all -s <subjid> -localGI
However it crashes straight away with the following error:
ERROR: cannot find /opt/magres/freesurfer-v5.3.0/average/lh.curvature.buckner40.filled.desikan_killiany.2009-03-04.gcs
When I look for the file mentioned in the error, the following file is there instead:
lh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs
Do you know why the folder contains a different file from the one the command is looking for? I cannot find this error reported elsewhere. Any ideas are much appreciated, thanks.
Thanks very much Lauren
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