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From: Ha Manh Luu Sent: Thursday, July 20, 2023 10:38 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Freeview ERROR: label name '3rd-Ventricle' is duplicated
Hello FreeSurfer Developers,
This is a follow up email.
I have installed FreeSurfer v6.0.0 in my MacOS 12.6.7 but I got Freeview crashed due to PETSC error (which has been fixed in FreeSurfer v7.1.1).
https://secure-web.cisco.com/1RJqIefNxfRtTCKZF077Mb-IUNvNuvbtvp-jQNPxZ2OB-xq...
For the consistency with my previous work, I do not want to upgrade to Freesurfer V7.x in my MAC.
I updated freeview from this website: https://secure-web.cisco.com/1xnbbPTAqJGJLP3_czdywDlc1ur4Ql3Y8A-1GlHVwDqERZQ...
After updating the Freeview, it works for me but it still shows the following error: ERROR: label name '3rd-Ventricle' is duplicated! ERROR: label name '3rd-Ventricle' is duplicated! CTABfindDuplicateNames: 1 duplicate names found in: /private/var/folders/4w/c9v2n39j3hd_4rb1bmyrftqw0000gt/T/FreeSurferColorLUT.txt
I cat the file and see that '3rd-Ventricle' has 2 lablels in the file. I also see that the FreeSurferColorLUT.txt file is not identical to the FreeSurferColorLUT.txt in FreeSurfer home folder.
Can you tell me what is the file FreeSurferColorLUT.txt for and the issue is serious or not? If so, how to fix this?
1. Freesurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0
2) Platform: MacOS Darwin 12.6.7
1. freeview: ERROR: label name '3rd-Ventricle' is duplicated! ERROR: label name '3rd-Ventricle' is duplicated! CTABfindDuplicateNames: 1 duplicate names found in: /private/var/folders/4w/c9v2n39j3hd_4rb1bmyrftqw0000gt/T/FreeSurferColorLUT.txt 2. FreeSurferColorLUT.txt: see attached
Thanks, Ha