Hi Camilo,
You need to give it the path and filename for the first dicom in the series, I think 003DCM is the directory, so you'll need to include the file name for one of the dicoms.
Also, you should consider converting to a .mgz file - as that is the input for most everything that Freesurfer is doing these days, and not COR. To do this you can simply specify the output filename:
mri_convert /path/to/dicom/file.dcm /path/where/you/want/003.mgz
Jenni
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of camilo@nmr.mgh.harvard.edu Sent: Friday, August 18, 2006 5:33 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Converting .dcm to COR files
Hi Freesurfer help,
I am trying to convert my .dcm files to COR format. I use:
mri_convert -ot cor 003DCM 003
I get the following error:
mri_convert -ot cor 003DCM 003 reading from 003DCM... corRead(): can't open file /autofs/space/rao_001/users/patrickp/eeg_propofol/control_01... /bourget/control_01/mri/orig/003DCM/COR-.info
I am running the standar enviroment in the nmr, and the location of my files is: /autofs/space/rao_001/users/patrickp/eeg_propofol/control_01/... bourget/control_01/mri/orig
Can someone give me some advise in this issue?
Thanks,
Camilo
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