you can try mri_annotation2label with the --lobes or --lobesStrict option to see if that gets you where you need to be
On 01/13/2016 12:49 PM, John Anderson wrote:
Thanks Doug, I aim to create masks for the frontal lobe , parietal lobe, occipital lobe and temporal lobe including all the parcellates in every lobe in one maks. I was thinking to use mri_binarize but the number of the parcellates is very big. Is there a way that can give a direct maks for cortical thickness by lobe? *Sent:* Wednesday, January 13, 2016 at 12:41 PM *From:* "Douglas N Greve" greve@nmr.mgh.harvard.edu *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] Cortical thickness parcellates Try mris_divide_parcellation
On 01/13/2016 12:18 PM, John Anderson wrote:
Dear experts, I am wondering if there is any way to divide the cortical thickness parcellates in the atlas "?h.aparc.annot" by lobe. I highly appreciate any suggestion.
Bests, John
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