Hi all,
I have encountered a few errors that seem to be caused by mritotal when creating the talairach.xfm file. I've attached environment information and the error output below.
I'm running FreeSurfer (20040218) on OSX 10.3 using the MNI tools provided with the FreeSurfer distribution. (mritotal is v 1.11.2.1 2003/11/17.) I'm also using perl v5.8.1-RC3.
Has anyone encountered this problem and is there a solution?
Thanks, Emmette
________________________________________________ talairach aVOTD registering aVOTD mri_convert orig orig/orig.mnc reading from orig... TR=1.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to orig/orig.mnc... Variable "$ProgramName" is not imported at freesurfer/minc/bin/mritotal line 210. Variable "$ProgramName" is not imported at freesurfer/minc/bin/mritotal line 210. Variable "$ProgramName" is not imported at freesurfer/minc/bin/mritotal line 210. Variable "$ProgramName" is not imported at freesurfer/minc/bin/mritotal line 217. Variable "$ProgramName" is not imported at freesurfer/minc/bin/mritotal line 217. Variable "$ProgramName" is not imported at freesurfer/minc/bin/mritotal line 217. Variable "$ProgramName" is not imported at freesurfer/minc/bin/mritotal line 265. Variable "$ProgramName" is not imported at freesurfer/minc/bin/mritotal line 422. Global symbol "$Clobber" requires explicit package name at freesurfer/minc/bin/mritotal line 108. Global symbol "$TmpDir" requires explicit package name at freesurfer/minc/bin/mritotal line 121. Global symbol "$ProgramName" requires explicit package name at freesurfer/minc/bin/mritotal line 210. Global symbol "$ProgramName" requires explicit package name at freesurfer/minc/bin/mritotal line 210. Global symbol "$ProgramName" requires explicit package name at freesurfer/minc/bin/mritotal line 210. Global symbol "$ProgramName" requires explicit package name at freesurfer/minc/bin/mritotal line 217. Global symbol "$ProgramName" requires explicit package name at freesurfer/minc/bin/mritotal line 217. Global symbol "$ProgramName" requires explicit package name at freesurfer/minc/bin/mritotal line 217. Global symbol "$ProgramName" requires explicit package name at freesurfer/minc/bin/mritotal line 265. Global symbol "@DefaultArgs" requires explicit package name at freesurfer/minc/bin/mritotal line 281. Global symbol "$ProgramName" requires explicit package name at freesurfer/minc/bin/mritotal line 422. BEGIN not safe after errors--compilation aborted at freesurfer/minc/bin/mritotal line 455. Error: could not open file "/bsp/speechlab/users/emmette/FreeSurfer//aVOTD/mri/transforms/talairach.xfm". System message: No such file or directory mri_add_xform_to_header: could not read xform file 'FreeSurfer//aVOTD/mri/transforms/talairach.xfm'
No such file or directory