Not sure whey those are there. Why not just create your WM mask with mri_binarize --i aseg.mgz --match 2 4 --o wm.mask.mgz
On 9/1/2021 8:37 PM, Ammar Shujaa wrote:
External Email - Use Caution
Hello freesurfer developer,
I have extracted the right and left cerebral white matter (label 2, and label 4)
Inline image
I just want to know how I can remove label 4, 43, 28, 60 (brown and purple labels) from the the right and left cerebral matter so that I can get the cerebral white matter *without* the segments corresponding to the labels 4, 43, 28, and 60.
Inline image
I am looking forward to hearing from you.
Best regards, Ammar Shujaa Addin
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer