Can you send the recon-all.log file?
On 08/29/2018 04:51 PM, Song, Da-Yea wrote:
External Email - Use CautionThere is enough disk space and it works fine with the other subjects. But for a few subjects in particular I seem to get the same error message. I checked once more and it seems that the rh.white files are being saved in the stats folder (rather than being in the "surf" folder) . The size of the files are 0KB.
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas N. Greve Sent: Wednesday, August 29, 2018 4:44 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] MRIread error
Check permissions first. Look at the size of the file. Is it much smaller than other rh.white files in other subjects? Have you run out of disk space?
On 08/29/2018 04:37 PM, Song, Da-Yea wrote:
External Email - Use Caution
Hi everyone,
I'm trying to pre-process subjects through the pipeline but keep getting a handful of subjects that error out within seconds of running them. The error message I get is:
MRISread(/subjects/002_1006/surf/rh.white):could not open file
When I go into the subject's folder, I find the rh.white file in the stats folder. I've run about 100 subjects without an issue but for some reason there are a few subjects that will stop processing with the same error message. Any suggestions or comments would be greatly appreciated.
Thanks!
Dayea
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