Hello, I’ve been having a problem with recon-all lately. I’m relatively new to FreeSurfer and the processes that I have done in the past have been done on sample individualized scans in my lab and I ran into an issue once I started trying to run FreeSurfer on fMRI data provided by our lab. Whenever I try to run the command this is the generated output:
#@# MotionCor Wed Nov 23 11:01:54 EST 2016 Found 1 runs /export/home/jawilks/Desktop/freesurfer/subjects/run_02/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... ERROR: input(s) cannot have multiple frames! /export/home/jawilks/Desktop/freesurfer/subjects/run_02/mri/orig/001.mgz has 160 frames Linux tykwer.engin.umich.edu 2.6.18-416.el5 #1 SMP Wed Oct 26 12:04:18 EDT 2016 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s run_02 exited with ERRORS at Wed Nov 23 11:01:57 EST 2016
The archives have not been of any help and I would greatly appreciate it if someone would be able to help point me in the right direction.
Thank You