no, I didn't get it On Mon, 16 Dec 2013, Rujing Zha wrote:
Dear Bruce, Thanks Bruce. That's all right. I want to know if I e-mail to you my subject's data successfully. The subject's image had a incorrect segmentation in surfs after recon-all. Thanks in advance. All the best. 2013-12-16
Rujing Zha
发件人：Bruce Fischl fischl@nmr.mgh.harvard.edu 发送时间：2013-12-16 22:24 主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the command-line ERROR 收件人："Rujing Zha"charujing123@163.com 抄送："freesurfer"freesurfer@nmr.mgh.harvard.edu sorry, I don't know that code very well. Doug is probably the right one to
?? ?
help you Bruce On Mon, 16 Dec 2013, Rujing Zha wrote:
Dear Bruce, I did setup the "-run 015" not "013" in unpacksdcmdir as I told in previo
us
message. But it generated the "013" folder automatically after running unpacksdcdir, which made me so confused. As it created the "013" folder, I guess unpacksdcmdir didnot recognized structure image correctly which was in the "15th" line of the scan.info.
?? ?> Thanks Bruce.
All the best. 2013-12-16 _________________________________________________________________________
___
Rujing Zha _________________________________________________________________________
___
发件人：Bruce Fischl fischl@nmr.mgh.harvard.edu 发送时间：2013-12-16 22:12 主题：Re: [Freesurfer] unpacksdcmdir: specifies unpacking rules from the
?? ?> command-line ERROR
收件人："Rujing Zha"charujing123@163.com 抄送："freesurfer"freesurfer@nmr.mgh.harvard.edu but why are you giving recon-all the path to run 013 instead of 015? I
?? ?> don't know the fsfast file structure, but your scan.info says that 013 is
?? ?an EPI fun and 015 is the mprage
On Sat, 14 Dec 2013, Rujing Zha wrote: > Hi Bruce, > It generated a 013 subfolder in after running this code "unpacksdcmdir
?? ?
> -src ../data/liujunhao -targ ../work/liujunhao -fsfast -run 015 3danat
?? ?mg
z > 001.mgz". It is 15 that I can see the number of t1_mpr_ns_sag_iso_zhan
g ?? ?in
> the unpack.log. > Then I ran "recon-all -i ../work/liujunhao/3danat/013/001.mgz -s liujun
ha
o", > and it finished without error. > "recon-all -s liujunhao -all" was run and ERROR would be displayed: > ERROR: input(s) cannot have multiple frames! > The recon-all.log unpack.log and scan.info were unloaded in the attachm
en
t. > Thanks. > All the best. > > 2013-12-14 > > _______________________________________________________________________
__
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