This is a bug. I've put a new version of mri_annotation2label here: https://gate.nmr.mgh.harvard.edu/safelinks/greve/ username 'guest' password 'collab'
copy it into $FREESUFER/bin (after making a copy of the one that is there).
On 11/22/2021 12:23 PM, Dr. Cornelius Kronlage wrote:
External Email - Use CautionDear freesurfer community,
when trying to obtain lobe labels for fsaverage_sym, mri_annotation2label segfaults - see terminal output below. It works smoothly for fsaverage and any other subjects. Is there any workaround?
mri_annotation2label --subject fsaverage_sym --hemi lh --lobes fsaverage_sym_lh.lobes.annot
subject = fsaverage_sym annotation = aparc hemi = lh surface = white
Reading surface /home/ckronlage/epi/DATA/tmp4_working//fsaverage_sym/surf/lh.white Loading annotations from /home/ckronlage/epi/DATA/tmp4_working//fsaverage_sym/label/lh.aparc.annot reading colortable from annotation file... colortable with 1036 entries read (originally /scratch/tmpdir.annot2std.28231/seg.1.073.xhemi.ctab) Seg base 1000 MRISmergeAnnotations: parcCount=10, newparcname=frontal mri_annotation2 supposed to be reproducible but seed not set Segmentation fault (core dumped) Thank you and best wishes Cornelius
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