Hello,
I am facing a problem similar to what others in the community have reported: when trying to "Generate Stats Data tables" in qdec, I get following error:
SUBJECTS_DIR is '/home/ubuntubeast/Documents/freesurfer_subj_dir' mkdir -p /home/ubuntubeast/Documents/freesurfer_subj_dir/qdec/stats_tables/ ERROR: In /usr/pubsw/packages/KWWidgets/CVS-vtk560/KWWidgets/vtkKWTkUtilities.cxx, line 230 vtkKWQdecApp (0x287ec5a0): Script: vtkTemp2 GenerateStatsDataTables Returned Error on line 1: Uncaught exception: command failed: mkdir -p /home/ubuntubeast/Documents/freesurfer_subj_dir/qdec/stats_tables/
Stack trace: Uncaught exception: command failed: mkdir -p /home/ubuntubeast/Documents/freesurfer_subj_dir/qdec/stats_tables/
while executing "vtkTemp2 GenerateStatsDataTables"
I tried using the command asegstats2table --common-segs --meas volume --e /home/ubuntubeast/Documents/freesurfer_subj_dir/qdec/stats_tables/aseg.volume.stats.dat --statsfile=aseg.stats --subjects 001 002 003 004
which gave NO errors.
Do you have any suggestions? I am using .csh and freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 on a Ubuntu 14.04
Thank you in advance, Constantin