Hi Amrita
please don't take an image of the text and send us that. Just copy and paste the text directly into the email. This is *much* more useful for us.
cheers Bruce
On Fri, 25 Jan 2019, Amrita Bedi wrote:
External Email - Use Caution
[0a440090-c896-4f22-8bd2-fe98f24c8013] On Friday, January 25, 2019, Amrita Bedi amibedi273@gmail.com wrote: [IMAGE] Here you go. On Friday, January 25, 2019, Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu wrote: Hi Amrita, can you just paste the text into the email? thanks doug
On 1/25/19 10:51 AM, Amrita Bedi wrote: External Email - Use Caution Hi Dr Greve,Ran mris_fwhm and got the attached.
On Thursday, January 24, 2019, Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu wrote: Based on the output below, it looks like there are problems with running one of the freesurfer binaries. Can you run mris_fwhm ? Just type the command and return and see what happens.
/home/apps/freesurfer-6.0/freesurfer/bin/mris_fwhm --mask /share/VA_Imaging/Projects/salat/2389_TRT/abedi/TRT_0008_recon/Bold1/fc.lpccseed.surf.lh/mask.nii.gz --i /share/VA_Imaging/Projects/salat/2389_TRT/abedi/TRT_0008_recon/Bold1/fc.lpccseed.surf.lh/rho1mn.nii.gz --o /share/VA_Imaging/Projects/salat/2389_TRT/abedi/TRT_0008_recon/Bold1/fc.lpccseed.surf.lh/rho1mn.sm.nii.gz --fwhm 20.000000 --smooth-only --s fsaverage --hemi lh --sd /share/VA_Imaging/Projects/salat/2389_TRT/abedi /home/apps/freesurfer-6.0/freesurfer/bin/mris_fwhm: /home/apps/matlab/MATLAB/R2011b/sys/os/glnxa64/libstdc++.so.6: version `GLIBCXX_3.4.11' not found (required by /home/apps/freesurfer-6.0/freesurfer/bin/mris_fwhm) On 1/23/19 10:11 AM, Amrita Bedi wrote: > > External Email - Use Caution > > Hi Dr Greve, > > Attached is the log file. > > On Tuesday, January 22, 2019, Greve, Douglas N.,Ph.D. > <DGREVE@mgh.harvard.edu <mailto:DGREVE@mgh.harvard.edu>> wrote: > > Can you send the full terminal output and/or the log file? > > On 1/22/19 2:53 PM, Amrita Bedi wrote: > > > > External Email - Use Caution > > > > Hello Freesurfer developers, > > > > I was following the functional connectivity walkthrough for resting > > stage BOLD data and I got the attached error when I ran step 8 > > (selxavg3-sess). Does anyone have any thoughts on how to trouble > shoot > > this? > > Not sure if it’s of any use but I ran this using Freesurfer 6.0 on > > Centos 7.4 > > > > Thank You. > > > > Best > > Amrita > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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