If you have the annot files in your individual subject's space, then you can create a volume in the same way that aparc+aseg.mgz is created. In v6 and before, run mri_aparc2aseg. In v7, run mri_surf2volseg. Look in recon-all.log to see how it was run to craeate aparc+aseg.mgz and change the command line to indicate a different annot and a different output
On 5/7/2020 12:17 PM, pooja prabhu wrote:
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HCPMMP1 parcellation is multi modal parcellation We need the file something like we have for 'aparc' parcellation. The file format should be in .mgz (aparc.HCPMMP1+aseg.mgz) How can i do it? (i have lh.HCPMMP1.annot and rh.HCPMMP1.annot)
Date: Thu, May 7, 2020 at 2:16 PM Subject: HCPMMP1 parcellation to aseg (.mgz) To: <freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu>
Hai list,
Can I get some insight on how to convert HCPMMP1 to aseg(provided we
have annotation files) for fsaverage brain?
For example: for aparc parcellation we use aparc2aseg and get
aparc+aseg.mgz.
Similarly I need for HCPMMP1. Can someone help me with this? Thank you
From: "Glasser, Matthew" <glasserm@wustl.edu mailto:glasserm@wustl.edu> Subject: Re: [Freesurfer] HCPMMP1 parcellation to aseg (.mgz) To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu> Cc: Timothy Coalson <tsc5yc@mst.edu mailto:tsc5yc@mst.edu> Message-ID: <29142489-F691-4E6E-A069-F7377D9C7A63@wustl.edu mailto:29142489-F691-4E6E-A069-F7377D9C7A63@wustl.edu> Content-Type: text/plain; charset="utf-8"
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That is our multi-modal parcellation. Tim has some instructions to get data from the fs_LR mesh to fsaverage in GIFTI format. Doug perhaps you can say how to convert from GIFTI to annot?
Matt.
-- Thank You Pooja Prabhu
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