you'll have to look at the help. It's pretty extensive since Doug wrote it :) Then you can use freeview to visualize the transformed intensity and aseg volumes
cheers Bruce On Tue, 5 Mar 2013, Natalie Han wrote:
Thanks for the quick reply. Can you elaborate a little bit how to use mri_vol2vol to get what I want? what would be the final scipt for tkmedit then?
On Tue, Mar 5, 2013 at 5:31 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Natalie
sorry, tkmedit won't do what you want. It's old and we are not developing it anymore. You can apply the transform using mri_vol2vol, just make sure to use nearest nbr interp for the aseg. cheers Bruce On Tue, 5 Mar 2013, Natalie Han wrote: Hi, all, I have a tkmedit display issue when I try to add transformation to the main volume, but the segmentation volume won't conform to Talairach domain accordingly. Here is the commandline tkmedit subject norm.mgz -main-transform talairach.xfm -seg aseg.mgz really appreciate any feedback on how to add transformation on this segmentation results. Thanks. NatalieThe information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.