Thanks the -no1d flag worked.
What does this flag change about the normalization process?
-Keyma
Quoting Bruce Fischl fischl@nmr.mgh.harvard.edu:
YOU> run it with -no1d. Also, check the talairach. YOU> YOU> Bruce YOU> YOU> On Mon, 26 Jul 2004, Chekema YOU> Nayasha Prince wrote: YOU> YOU> > Hello, YOU> > YOU> > I'm trying to normalize an MPRAGE dataset and I received the following YOU> message YOU> > from the mri_normalize: YOU> > YOU> > MRInormalize:could not find any valid peaks YOU> > no such file or directory YOU> > mri_normalize: normalization failed YOU> > no such file or directory YOU> > YOU> > I tried to set control points ( 4 of them specifically) in the wm and YOU> tried to YOU> > rerun the mri_normalize but I received the same error. YOU> > YOU> > my orig volume looks just like my other datasets that worked properly. YOU> Can you YOU> > let me know what could be causing the error? YOU> > YOU> > -Keyma YOU> > YOU> > YOU> > YOU> > _______________________________________________ YOU> > Freesurfer mailing list YOU> > Freesurfer@nmr.mgh.harvard.edu YOU> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer YOU> > YOU>