You need to place the -i flag before the input and the -seg flag before the seg. doug
Christopher Luna wrote:
Hello,
I'm trying to run mri_segment with some custom values in the optional flags, such as -p for setting the percentage threshold with a float value.
When I run the command though, "mri_segment -p 0.6 brain.mgz wm.seg.mgz"
The command properly sets the threshold to 60%, but also takes the "0.6" to be in the input file name instead of brain.mgz.
Is there another option I'm missing? Or have I unfortunately stumbled upon a small bug?
Thanks, Christopher Luna MIT Brain and Cognitive Sciences, Class of 2012 Desimone Lab, McGovern Institute for Brain Research MIT Archery Club Alpha Kappa Psi Colony at MIT
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