Re: [Freesurfer] bbregister error: no regisster.dat file

Hi Priyank, can you send the full terminal output and/or the log file created? thanks doug

On 01/03/2013 03:11 PM, Shukla,Priyank wrote:

Hi, My bbregistration finished with the warnning"

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WARNING: initial G-W contrast was negative, but expected positive. If the mov data has a T1 contrast, re-run with --T1

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and does not create subj_RS_register.dat file... I thought, it is only warning so it should create the files. Here is the command, I run to do bbregistration, where ${sub} is substituted by subject number:

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bbregister --s ${sub}_FS --mov $main_path/$sub/${sub}.RS.mgz --reg ${sub}_RS_register.dat --init-fsl --bold --frame $framenum --nearest

--o ${sub}.RS.template.mgz

Thanks Priyank

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