how do you know it is the right hemi and not the left?
Also, we don't use or support tksurfer anymore. Try freeview instead
cheers Bruce On Sun, 3 Jul 2016, 李琬 wrote:
Dear all,
I've been trying to use "tksufer" to check the surface images according to the instruction of "Inspection of Freesurfer Oupt".
I could get the images, but the direction is opposite.
Like if I typed "tksurfer fsaverage lh inflated ", but I got the right one.
What may be wrong?
Thank you!
[root@server1 subjects]# tksurfer fsaverage lh inflated
subject is fsaverage
hemi is lh
surface is inflated
surfer: current subjects dir: /usr/local/freesurfer/subjects
surfer: not in "scripts" dir ==> using cwd for session root
surfer: session root data dir ($session) set to:
surfer: /usr/local/freesurfer/subjects
checking for nofix files in 'inflated'
Reading image info (/usr/local/freesurfer/subjects/fsaverage)
Reading /usr/local/freesurfer/subjects/fsaverage/mri/orig.mgz
surfer: Reading header info from /usr/local/freesurfer/subjects/fsaverage/mri/orig.mgz
surfer: vertices=163842, faces=327680
surfer: single buffered window
surfer: tkoInitWindow(fsaverage)
surfer: using interface /usr/local/freesurfer/tktools/tksurfer.tcl
Reading /usr/local/freesurfer/tktools/tkm_common.tcl
Reading /usr/local/freesurfer/tktools/tkm_wrappers.tcl
Reading /usr/local/freesurfer/lib/tcl/fsgdfPlot.tcl
Reading /usr/local/freesurfer/tktools/tkUtils.tcl
Successfully parsed tksurfer.tcl
reading white matter vertex locations...
% surfer: loaded inflated into set 1
surfer: curvature read: min=-0.673989 max=0.540227
--
Wan