Hi victor If you upload the subject I will take a look. 5.3 may help Bruce
On Jul 30, 2013, at 1:36 PM, Victor Kovac kovac081@umn.edu wrote:
Dear Freesurfer experts,
I am running recon-all on very atrophied brains with mixed results. Attached is an image of a brain where segmentation has gone awry. There is no message indicating talairach failure, and the segmentation appears to need WM and pial edits as well as the ventricles to be filled, so I am not sure how to proceed.
If you have any recommendations as to how to fix these errors, I would very much appreciate it -- these data are past their deadline, and I am at a loss.
Thank you!
Sincerely, Victor <Bad_segmentation.png> <recon-all.log> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer