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Perfect! Thank you so much for the clarification.
Stay safe
On Tue, Mar 16, 2021 at 11:53 PM Iglesias Gonzalez, Juan E. < JIGLESIASGONZALEZ@mgh.harvard.edu> wrote:
Dear Alex,
As explained in the wiki, if you run the module on a FreeSurfer processed subject, the output will be in the subject’s mri directory, and will be called: hypothalamic_subunits_seg.v1.mgz
So you could run something like:
cd $SUBJECTS_DIR/<SUBJECT_NAME>/mri
freeview nu.mgz hypothalamic_subunits_seg.v1.mgz
If you ran the module on a raw t1 scan, then the output will be wherever you specified with the flag -o
Kind regards,
Eugenio
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
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*From: *freesurfer-bounces@nmr.mgh.harvard.edu on behalf of "Lab of Autism and Developmental Neuroscience, Lab of Autism and Developmental Neuroscience" ladn@email.gwu.edu *Reply-To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Date: *Tuesday, March 16, 2021 at 23:22 *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject: *[Freesurfer] Hypothalamus segmentation output
External Email - Use Caution *Dear Freesurfer experts,
Hope that you all are well and stay safe.
I would like some help figuring out the code to open the output for the hypothalamus segmentation (via freeview). Does anyone have this info? I didn't find it on the website.
Thank you so much!
All the best,
Alex _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1H38lylt88AJLP0jL_vYdoopjyZHyqCy_wku5EU2mLyZqW5...