Have you looked at the aparc+aseg.mgz? It has cortical and subcortical labelings. You can convert it to analyze with mri_convert.
Behrang Nosrat Makouei wrote:
Hi,
I actually had the some extra question in addition to the question Shahab had. So i thought to put the questions in the reply. My final goal is to have Cortical Regions segmented at the subjects native coordinate space. And I prefer to have the segmentation in analyze format.
and also, I was wondering if 1- there is a way of saving Surfaces generated with FreeSurfer into an analyze image. 2- If we can control how fine the cortical segmentation be. (the number of regions segmented).
Behrang,
On 9/23/06, Bruce Fischl <fischl@nmr.mgh.harvard.edu mailto:fischl@nmr.mgh.harvard.edu> wrote:
Hi Shahab, the ?h.*.annot files are the cortical labelings. What exactly do you wat to do with them? cheers, Bruce On Sat, 23 Sep 2006, Shahabuddin Ansari wrote: > Hi, > > I can extract subcorical objects from freesurfer segmentation, since each object is lableled with normalized intesity value. I was wondering if I can extract different cortical regions in the same fashion. I can, though, view the labeled cotical surface in tksurfer. > > Thanks > Shahab > > > --------------------------------- > Get your email and more, right on the new Yahoo.com <http://Yahoo.com> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>-- Behrang Nosrat Makouei, Engineering Science, MICA Lab (MIAL), TASC 9400, SFU. cell: 778-885-5016
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