Hello,
I am trying to use func2roi and roisummary to analyze activation of the left and right dACC. I used the following func2roi command to get the ROI data for our 1vFix condition:
func2roi-sess -roidef dACC_fsaverage_left -analysis fmcsm5_functionals -anatlabel dACC_fsaverage-lh -maskcontrast Cond1vFix -maskthresh 1.3 -masktail pos -maskmap sig -sf /autofs/space/seymour_001/users/folate_subjects/Subject_files/10Pre10Post -d /autofs/space/seymour_001/users/folate_subjects
I then used the following command to produce the data summary:
roisummary-sess -roidef dACC_fsaverage_right -analysis fmcsm5_functionals -sf /autofs/space/seymour_001/users/folate_subjects/Subject_files/10Pre10Post -d /autofs/space/seymour_001/users/folate_subjects -sumfile /autofs/space/seymour_001/users/folate_subjects/dACC_fsaverage_right
However, the resulting data sheet (see attached) appears to show 9 conditions with only 1 estimate for each. How do I generate multiple estimates for each condition, and, even better, how can I incorporate multiple conditions (3vFix, 5vFix, etc) into the same roisummary?
Thanks,
Adam Nitenson, B.S. Brain Genomics Lab Massachusetts General Hospital