try
cd $SUBJECTS_DIR/subject/surf
mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.pial.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab subject lh pial
On 2/7/17 4:48 AM, Clara Kühn wrote:
Dear FreeSurfer experts,
I'm trying to extract a total Pial Surface Area like it is extracted for White Surface Area in the ?h.aparc.stats file. I have tried this command but it doesn't seem to include Pial Surface Area:
mris_anatomical_stats -a $SUBJECTS_DIR/ZF1K.base/label/lh.aparc.annot -f $SUBJECTS_DIR/ZF1K.base/stats/lh.aparc-areapial.stats -b ZF1K.base lh pial
How could I extract the total Pial Surface Area for each participant?
Thank you for you help! Clara _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer