there should be a fwhm.dat file in the output.
doug
Jerry Yeou-Wei Chen wrote:
Hello,
I have a question regarding performing Monte Carlo simulations when a custom design matrix is being used. The wiki says that "For both MC simulations, you must supply the smoothness of your data as Full-Width/Half-Max (FWHM) of the residual. This can be obtained from the ResidualFWHM value in y.fsgd in the glm output directory." If I understand correctly, this means that the --fwhm flag should be specified when running mri_glmfit to generate CSD's... However, when running a custom design matrix, the y.fsgd file is not generated (since the --fsgd flag cannot be specified at the same time as --X). So, my question is: how do I get the required FWHM value?
Thanks,
- Jerry
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