I would try:
chmod -R 777 /usr/tmp
2008/7/6 Woo-Suk, Tae wstae@kangwon.ac.kr:
Dear FreeSurfer experts!
I had a error message when I ran a subjects on cluter super-computer. It seemed that the error was caused by permission on "/usr" directory. How can I correct this problem?
Woo-Suk, Tae Chuncheon, Korea
Iteration 1 Mon Jul 7 08:51:03 KST 2008 nu_correct -clobber ./tmp.mri_nu_correct.mni.25070/nu0.mnc ./tmp.mri_nu_correct.mni.25070/nu1.mnc couldn't create "/usr/tmp/nu_correct_25115/": Permission denied [a174tws@tachyond:/home01/a174tws/freesurfer/subjects/001/mri/] [2008-07-07 08:51:04] running: /home01/a174tws/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir /usr/tmp/nu_correct_25115/ ./tmp.mri_nu_correct.mni.25070/nu0.mnc ./tmp.mri_nu_correct.mni.25070/nu1.imp
nccreate: filename "/usr/tmp/nu_correct_25115/nu0.mnc": No such file or directory micreate: MINC package entry point nu_estimate_np_and_em: crashed while running mincresample (termination status=768) nu_correct: crashed while running nu_estimate_np_and_em (termination status=768) ERROR: nu_correct Linux tachyond 2.6.9-67.0.4.ELsmp #1 SMP Wed Mar 19 15:45:32 KST 2008 x86_64 x86_64 x86_64 GNU/Linux
recon-all exited with ERRORS at Mon Jul 7 08:51:05 KST 2008
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