Hi Bruce,
So when I'm at this page, I am separating the different parts of the brain so that in the 3D view they show up as their own entity, and I am trying to individually save them. When I press the save button shown on the left hand side of the screen, it saves as a .vtk file, which makes it difficult to upload into matlab. Is there a way to convert this 3D brain piece as an .mgz file?
Thanks
On Mon, Jul 18, 2016 at 5:40 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
What segmentation do you mean? Where are you getting vtk files? We write the segmentation into .mgz volumes such as aseg.mgz
Cheers Bruce
On Jul 18, 2016, at 1:19 PM, Abbie McNulty amcnult1@stanford.edu wrote:
So we were able to figure out how to segment the different parts of the brain using the bert sample, but have run into another problem. I would like to save each segmentation so that I can import it into matlab and create a matrix in order to create a mesh. The volume segment saves a as a .vtk file, which I don't know how to read into matlab. How can I save it as or convert it to a .mgz file so that I can import it into matlab?
Thanks!
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