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Thanks,
I am very sorry for the late reply. I didn't have a machine with more RAM at present,but i ran the code on another machine(mac mini,4G or 8G LPDDR3 SDRAM ,500GB) several month ago. it ran well.so i didn't certain it. I will try to test the code on a machine with more RAM if I get the opportunity. Thanks for your help . Fiona Ding.
------------------ 原始邮件 ------------------ 发件人: "Iglesias Gonzalez, Eugenio"e.iglesias@ucl.ac.uk; 发送时间: 2018年7月19日(星期四) 下午3:54 收件人: "Freesurfer support list"freesurfer@nmr.mgh.harvard.edu;"Freesurfersupport list"freesurfer@nmr.mgh.harvard.edu;
主题: Re: [Freesurfer]Re： Re： Re：segmentHA_T2.sh
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Thanks! I am fairly confident it's a memory issue, then. Do you have access to a machine with more RAM you can test the code on?
Sent from my phone, please excuse brevity and typos
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of 墨初 530337973@qq.com Sent: Thursday, July 19, 2018 5:27:46 AM To: Freesurfer support list Subject: [Freesurfer] Re： Re： Re：segmentHA_T2.sh
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I tried to run"segmentHA_T2.sh subject001 T2.nii T2 0" and "segmentHA_T1.sh subject003", it's well done! When run Thanks, Fiona
------------------ 原始邮件 ------------------ 发件人: "Iglesias Gonzalez, Eugenio"e.iglesias@ucl.ac.uk; 发送时间: 2018年7月18日(星期三) 晚上8:35 收件人: "Freesurfer support list"freesurfer@nmr.mgh.harvard.edu;"Freesurfersupport list"freesurfer@nmr.mgh.harvard.edu;
主题: Re: [Freesurfer] Re： Re：segmentHA_T2.sh
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Thanks!
Do you have the same problem if you use the T2 alone? For instance
segmentHA_T2.sh subject001 T2.nii T2 0
Sent from my phone, please excuse brevity and typos
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of 墨初 530337973@qq.com Sent: Wednesday, July 18, 2018 1:21:25 PM To: Freesurfer support list Subject: [Freesurfer] Re： Re：segmentHA_T2.sh
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Dear Eugenio,
I tried 3 subjects ,it dies at the same step ,and it stops there all the time even 3 days. No error reported here. Thanks , Fiona Ding.
------------------ 原始邮件 ------------------ 发件人: "Iglesias Gonzalez, Eugenio"e.iglesias@ucl.ac.uk; 发送时间: 2018年7月18日(星期三) 晚上7:29 收件人: "Freesurfer support list"freesurfer@nmr.mgh.harvard.edu;
主题: Re: [Freesurfer] Re：segmentHA_T2.sh
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Thanks, Fiona.
Is the error reproducible? Does it always die at the same step? Do you get the same problem with other subjects?
Cheers,
/Eugenio