Mishkin,
Does this directory exist?
/lab1/FreeSurfer/4.0.5/ms-mni/testing/tester
The error message you are seeing is checking for the existence of that directory.
Nick
On Tue, 2008-10-07 at 14:30 -0400, Mishkin Derakhshan wrote:
Hi, When I try to load a qdec.table.dat I always get the same error:
sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'tester' in SUBJECTS_DIR
I've tried digging around through the archives and still can't seem to find a solution for this problem. I've tried tcsh and the bash shell. Here is a bit more information and my qdec.table.dat is attached. Any ideas on how to get qdec up and running would be very useful. thanks, mishkin
FREESURFER_HOME: /lab1/FreeSurfer/4.0.5/quarantine Build stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v4.0.5 Debian version: lenny/sid Kernel info: Linux 2.6.24-18-generic x86_64
opus:/lab1/FreeSurfer/4.0.5/ms-mni/testing> qdec & opus:/lab1/FreeSurfer/4.0.5/ms-mni/testing> Reading /lab1/FreeSurfer/4.0.5/quarantine/lib/tcl/tkUtils.tcl
Using /lab1/FreeSurfer/4.0.5/quarantine/lib/tcl/fsgdfPlot.tcl
Loading data table /lab1/FreeSurfer/4.0.5/ms-mni/testing/qdec/qdec.table.dat... Setting SUBJECTS_DIR to '/lab1/FreeSurfer/4.0.5/ms-mni/testing' Number of columns: 4 fsid column: 1 Number of factors: 3 Number of subjects: 2 Reading discrete factor levels from config file /lab1/FreeSurfer/4.0.5/ms-mni/testing/qdec/gender.levels...'Male','Female', done.
Data table /lab1/FreeSurfer/4.0.5/ms-mni/testing/qdec/qdec.table.dat loaded. SUBJECTS_DIR is '/lab1/FreeSurfer/4.0.5/ms-mni/testing' sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'tester' in SUBJECTS_DIR sh: Syntax error: Bad fd number ERROR: QdecProject::VerifySubjects: Couldn't find subject 'tester2' in SUBJECTS_DIR Error loading the data table. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer