22 Jul
2013
22 Jul
'13
12:49 p.m.
I guess the solution is -nofill...
2013/7/20 Caspar M. Schwiedrzik cschwiedrz@rockefeller.edu:
Hi Freesurfer Experts, I am working on a primate anatomy and I am having problems with the white matter filling in the temporal lobe in version 4.5. I manually edited wm.mgz and recreated filled.mgz using mri_fill. I then manually edited filled.mgz. However, when I then run autorecon-all -autorecon2-wm, all my manual edits in filled.mgz are overwritten. Is there a way to autorecon2-wm without mri_fill in v4.5? Thank you very much, Caspar