Forwarding to the list so others can chime in.
---------- Forwarded message ---------- Date: Mon, 29 Jul 2013 18:19:38 -0400 From: Subhabrata Chaudhury subha@scientist.com To: Louis Nicholas Vinke vinke@nmr.mgh.harvard.edu, Aaron Tanenbaum aaron.b.tanenbaum@gmail.com Subject: Re: [Freesurfer] break up time course nifti
Greetings Dr. Vinke and Dr. Tanenbaum, I saw your recent freesurfer posts. I have piped BOLD volumeetric nii files for each TR onto the subject's freesurfer surface using bbregister. The resulting surface files (1 for each TR) are in mgh format. Now I want to do a first level glm analysis on the surface files. I havent come across any tool that will allow me to conduct a first level glm analysis using the mgh files. So I was thinking if there is a way to convert these mgh files to nii files and then be able to read in these 'surface' nii files into fsl or spm or afni. Do you have some experience in this regard that you can share ? I will be highly obliged if you can help me with this and share your thoughts. Thank you for your help, Subha
----- Original Message -----
From: Louis Nicholas Vinke
Sent: 07/29/13 05:46 PM
To: Aaron Tanenbaum
Subject: Re: [Freesurfer] break up time course nifti
Hi Aaron, You can use the -f or -nth flags with mri_convert. -Louis
On Mon, 29 Jul 2013, Aaron Tanenbaum wrote:
hola freesurfers, I have a time course surface nii files. I would like to break up the time course into many nii files for each time frame. Is there an easy way of doing this. Thank you Aaron Tanenbaum
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.