Hi Nick,
it looks like the base finished without error. But if your *.long.basid/surf/ are missing the lh.thickness , then something went wrong when processing the -long runs. I would recommend to run a single subject step by step to see what goes wrong (could be IO problems or disk space etc).
Best, Martin
On Aug 15, 2016, at 11:06 PM, Corriveau-Lecavalier Nick nick.corriveau-lecavalier@umontreal.ca wrote:
Hello FreeSurfer developers,
I am trying to run the long_mris_slopes command for surfaces. It worked well the thickness, but when I run it for surfaces, my terminal tells me that the surface file (lh.surface or rh.surface) is missing. It appears that all my subjects are missing those files. I've search the list and no similar error seems to have been reported.
This is the exact command I used: long_mris_slopes --qdec /Applications/freesurfer/subjects/longitudinal_training/long_training.dat --meas surface --hemi rh --do-avg --do-rate --do-pc1 --do-spc --do-stack --do-label --time weeks --qcache fsaverage --sd /Applications/freesurfer/subjects/
I am running a on a OS X El Captain software, and the FreeSurfer version I am using is the most recent one. I also joined the recon-all.long of one of my subject (of the base, since I'm running longitudinal data), in case it could help.
Regards,
Nick <recon-all.log>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer