I think you can set the outline color of each label indepently by using it's index which is assigned in the order in which it is loaded I believe. So in our example below labl_set_color 0 255 0 0, change the first "0" to a "1" for the second label. Also, I would have thought labl_select -1 would deselect the label and turn off the white marks, but if not you can also try calling clear_all_vertex_marks in the tcl script
On Fri, 9 Dec 2011, Justin Baker wrote:
OK, right-clicking on the surface did in fact de-select the label (turning it all to a uniform color). Way to script a right-click? (I see left click...)
Now that this is more or less working, I am looking to do something slightly different: i.e., combine the boundaries of one set of regions, one highlighed region, and an activation map. Is there a way to fill just one label and leave outlines for a different set of labels in the same image? Or alternatively set a different outline color for one label? As in my previous post, I am looking to do this via tcl script if possible.
Thanks.
On Mon, Dec 5, 2011 at 3:07 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: yes, just use the -tcl <script name> option, but don't but an "exit" command at the end of the tcl script
cheers Bruce On Mon, 5 Dec 2011, Justin Baker wrote: Ah - in that case I have a total newbie question, since I primarily use tksurfer via command line: Is there a way to load up a case using the tcl script, but then leave it open rather than quit? This way I could try de-selecting with right-click. Thanks. On Mon, Dec 5, 2011 at 9:05 AM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote: I think so, but I want to see if it fixes your problem before I go digging through the tcl code to see what it is On Mon, 5 Dec 2011, Justin Baker wrote: Is there a command to do this via tcl script? Justin On Sun, Dec 4, 2011 at 8:49 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote: What happens if you right click on the surface then? On Dec 4, 2011, at 8:17 PM, Justin Baker <justintbaker@gmail.com> wrote: Hi Bruce, Thanks. Some progress! That resulted in the label border turning red, but the fill is still white. Any other thoughts? Cheers, Justin On Wed, Nov 30, 2011 at 2:54 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote: Hi Justin try unselecting the label with: labl_select -1 cheers Bruce On Wed, 30 Nov 2011, Justin Baker wrote: I am trying to use tksurfer to script overlay of a label + functional map onto an fsaverage5 surface. In particular, I want to set the label to "fill" and color it red. I have: set labelstyle 0 labl_set_color 0 255 0 0 As you can see below, the output of label_print_list shows that the color of the label should be "255 0 0 " but it looks white in the output image. Am I missing something? Thanks ------------ subject is fsaverage5 hemi is lh surface is inflated Label 0 Name: lh.17Networks_LH_ContB_PFClv.label, 109 vertices Structure: -1 Color: 255 0 0 Visible: 1 Bounds: x -20.879234 12.792567 y -4.000000 109.853737 z -4.033233 4.040778 The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.